rs4139261 SNP Detail

Summary

• ID
  rs4139261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:115636008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAA ATCCTACAGG TCAAACCAAA
  Y
  GACCTGCCCT AAAAAGCTGC AAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5110038	WI_WGS_7_105658869	WI	MOUSE	f	SNP			C	T
ss46096547	mCV22595775	ABI	CRAMUS_MOUSE	f	SNP	C	T		T	C
ss145720565	ENSMUSSNP2691843	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs4139261					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:115636008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19604	CpG island 19604	1981 bp distal
Rr654130	regulatory region 654130	within coordinates
Rr654131	regulatory region 654131	1131 bp proximal
Rr654132	regulatory region 654132	1961 bp proximal
Sox6	SRY (sex determining region Y)-box 6	within coordinates
Tssr74386	transcription start site region 74386	1961 bp downstream