rs4139262 SNP Detail

Summary

• ID
  rs4139262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8896851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAAAC TGCATATTAG
  ACAAGCTACT TCCTGGACTA AATATGTAAA TTGTTACATA TCCGTGAATA AAGTATCATT
  GTTGTAGTGT AGACTTGGTA CCCACTTTTA GCTCTGTAGT CACTTGCTGA AGAGAGGTGA
  CCCTGAAGAA ACTACAGCTC GTGGAGCGGA AAATCTAGAA GGAACTTTTA AAAATTGTCC
  Y
  ATGGTAATGA CATAATTTTG GCCTAAAATT GGAAGGCTGA TGAGATGGTT CAACAGTTAG
  AGCACCAAAC CTGAGGTCCC AAGGCTAAAA CTCCAAAGTC CTCTGGTCCT CACGAACATG
  TGTAACTGTT TTCAAATCCT ATTTTTAATG ATGATTCTTA AACACTTTAA CCTCCCTTGT
  AGTCCACCAC CCACCAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss5110039	WI_WGS_19_8280562	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs4139262					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8896851 () rs orientation: forward

Symbol	Name	Function Class
B3gat3	beta-1,3-glucuronyltransferase 3	889 bp upstream
Cpgi10585	CpG island 10585	598 bp proximal
Gm36629	predicted gene, 36629	within coordinates
Rr394095	regulatory region 394095	1288 bp downstream
Tssr154878	transcription start site region 154878	871 bp upstream
Tssr154879	transcription start site region 154879	945 bp upstream
Tssr154880	transcription start site region 154880	974 bp upstream
Tssr154881	transcription start site region 154881	1009 bp upstream