rs4139277 SNP Detail

Summary

• ID
  rs4139277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174316573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTACTGA TTTTGCTTCC
  TTCATCTGGA GTGATGGGGA TGGATCGTTA GGTGGGTGGA TGTCTGGGGT CCGATGGTCT
  TTTCTGTGTC TCCCTGTACT AAAAAATGCT AATAACTCTT TGGGGTTTGG AAAACAAGGT
  CTTCCTTCTA TCACTGCCTC CTAGGGACAC ACTAAGAGGC TCACTGAGGA TGCAAAACAA
  R
  GTGTTTAGAC CCTTAAGAGT CATGTTAGTA ATGGTTCCTT TTATTGAGAG AGAAGTCATT
  AGGACATTGA CTTGATTTGG AATACGGTGA CTGGATCTCC TGAGTCTGCC CCAGGGATGG
  CACCTGTGAC TCCCGCCTGC CAGGAACTTC ACAACTGGTG GGGGACAAAC GACAAGTCAA
  GAGAAAACCA CAAGATACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss5110054	WI_WGS_2_175717068	WI	MOUSE	f	SNP	A			G
ss148344007	ENSMUSSNP4351926	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320627911	CHEV_2_174300281	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs4139277					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174316573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	1308 bp distal
Gm38546	predicted gene, 38546	671 bp downstream
Gm52540	predicted gene, 52540	1266 bp downstream
Prelid3b	PRELI domain containing 3B	1839 bp upstream
Rr397557	regulatory region 397557	1602 bp downstream
Rr572133	regulatory region 572133	1893 bp distal
Rr572135	regulatory region 572135	1790 bp distal
Rr572136	regulatory region 572136	1762 bp distal
Rr572137	regulatory region 572137	1585 bp distal
Rr572138	regulatory region 572138	795 bp distal
Tssr28035	transcription start site region 28035	1844 bp upstream
Tssr28036	transcription start site region 28036	1761 bp upstream