rs4139453 SNP Detail

Summary

• ID
  rs4139453
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18912651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA AAAGTCTTGG ATACAGCGAG
  M
  GAATGTTGGT ACCCGTGACA GAATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5110231	WI_WGS_7_14219637	WI	MOUSE	f	SNP		A	C
ss46056846	mCV25048406	ABI	CRAMUS_MOUSE	f	SNP	A		C	A
ss148469624	ENSMUSSNP2929830	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
ss322116611	CHEV_7_19764075	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs4139453					SNP	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18912651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	1916 bp distal
Cpgi18451	CpG island 18451	432 bp distal
Cpgi18452	CpG island 18452	231 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Rr155272	regulatory region 155272	within coordinates
Rr167138	regulatory region 167138	within coordinates
Tssr64795	transcription start site region 64795	487 bp downstream
Tssr64796	transcription start site region 64796	255 bp upstream