rs4139716 SNP Detail

Summary

• ID
  rs4139716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47887292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCC TCGCCTCGGG CGCCCTGGGC
  Y
  CGGGCTGGGC CACGCGTGCG CCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5110495	WI_WGS_14_39495671	WI	MOUSE	f	SNP		C	T
ss139408808	ENSMUSSNP4559753	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss324597842	CHEV_14_48269510	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs4139716					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47887292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6388	CpG island 6388	within coordinates
Ktn1	kinectin 1	within coordinates
Rr297095	regulatory region 297095	within coordinates
Tssr125321	transcription start site region 125321	1408 bp downstream
Tssr125322	transcription start site region 125322	1365 bp downstream
Tssr125323	transcription start site region 125323	715 bp downstream
Tssr125324	transcription start site region 125324	446 bp downstream
Tssr125325	transcription start site region 125325	551 bp upstream
Tssr128337	transcription start site region 128337	571 bp upstream