rs4139912 SNP Detail

Summary

• ID
  rs4139912
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  109
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:106604315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATTATGCT AATGCTATAA ACAGTAAAAT GAAGAGCCCA
  TGTCCTAGAA GGTAGGAACC TTCTAGATTG CAATCCTTAC CAGAGAAAAA TTAAGCATta
  W
  taataataat aataataata ataataCCAC TAAAGATGGG GGAAATCTCC CTGGTGTTTT
  AAAATCTTTT GCAATGCAAA GACAAGAACA GTTACTTATG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss5110691	WI_WGS_5_104121601	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs4139912					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:106604315 () rs orientation: forward

Symbol	Name	Function Class
Barhl2	BarH like homeobox 2	within coordinates
Cpgi16165	CpG island 16165	608 bp proximal
Rr123962	regulatory region 123962	285 bp proximal
Tssr52338	transcription start site region 52338	1494 bp downstream
Tssr52339	transcription start site region 52339	1960 bp downstream