rs4140014 SNP Detail

Summary

• ID
  rs4140014
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161323360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCCATTGA ACTCTAGTGT AAATTGTGGG
  TCTAGATGGG ATATGAACTG GAAATGTATA TCAATTAGGT TTTTCTAGAA GTGTTCTCTC
  ATACAGAACA GCCAGGGCTG CAGAGAGAGA GAGAGAGaaa aaaaaacagc aaaaaccaaa
  M
  caaaacaaac agacaaaaaa aaaaaaaaac aacaaaacaa aacaaaacaa aaaaaaccaa
  aaAAAGCATT GACCAGAAAA GCCAGAAAGG AATCAAATAT TAAATAAGAC ATTATATAAT
  TCAAGGGTTG GCCTATTTAT ATTAAAATAT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5110793	WI_WGS_1_162673323	WI	MOUSE	f	SNP		A	C
ss145915220	ENSMUSSNP1561476	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
ss320080919	CHEV_1_163425922	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs4140014					SNP	A	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161323360 () rs orientation: forward

Symbol	Name	Function Class
Tnfsf18	tumor necrosis factor (ligand) superfamily, member 18	within coordinates
Tssr9690	transcription start site region 9690	1135 bp downstream