rs4140212 SNP Detail

Summary

• ID
  rs4140212
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77543082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTATATTTT CTTGCTACAC AATGGTCCCA AAAGTCTGGC TTCTGGGAGC CTCTCCACAT
  CTTTAAATTC TCTCTTCGAG ATTTTTCTCT CTTGTCCTCA GTATCCAGGA CTCTTCACAG
  TTGTAGCATT TAAGAATGAA GAAAGGGGGC TGGTAGGATG GCTCAGCGGG TAAGAGCACT
  GACTGCTCTT CTGAAGGTCC TGAGTTCAAA TCCCACAACC ACATGGTGGC TTACAACCAT
  CCATAATGAG ATCTGACGCC CTCTTCTGGC GTGTCTAAAG ACAGCTACAG TGTACTTAAA
  K
  AAAAAAAAAA AAAAAGAATG CAGAAAGGTT TCTCAGTAGG CCACGGACAG CATCGGACTG
  ATGCGGGTTA TTAGGAAGTT TCTTTTCAAT GATCTATCTG CCCGTTACTG AAGATGATAC
  CACACTGACC TTTAGAAAGT CATTTCGTAC TCCAGGTGCC TATAAAAGCC CTCTGTCAAT
  TACAATCATT TGAATTGCTT TTCTTGCCTG AAATGTTCCC AGAGTAGGCA TTTCCCAGCA
  TGCTTCTGCA CAAGTGTGTT TATCACAGAC CCTCCTGTGA ATCAATGGCC GATGGAGGGC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5110994	WI_WGS_9_78340274	WI	MOUSE	f	SNP		G	T
ss46319471	mCV25224193	ABI	CRAMUS_MOUSE	f	SNP	G		T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs4140212					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77543082 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	within coordinates
Klhl31	kelch-like 31	932 bp upstream
Rr683389	regulatory region 683389	210 bp proximal
Rr683390	regulatory region 683390	711 bp proximal
Rr683391	regulatory region 683391	1017 bp proximal
Rr683392	regulatory region 683392	1614 bp proximal
Tssr86194	transcription start site region 86194	669 bp upstream
Tssr86195	transcription start site region 86195	694 bp upstream
Tssr86196	transcription start site region 86196	736 bp upstream
Tssr86197	transcription start site region 86197	775 bp upstream
Tssr86198	transcription start site region 86198	819 bp upstream
Tssr86199	transcription start site region 86199	821 bp upstream
Tssr86200	transcription start site region 86200	836 bp upstream
Tssr86201	transcription start site region 86201	913 bp upstream