rs4140271 SNP Detail

Summary

• ID
  rs4140271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165585289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT ACAATACAAA GTGAGTTCCA
  R
  GACAGACAGG GATATACAGA GAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5111054	WI_WGS_2_166710551	WI	MOUSE	f	SNP	G			A
ss45304845	mCV22645829	ABI	CRAMUS_MOUSE	f	SNP		G	G	A	G
ss148243770	ENSMUSSNP4622379	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4140271					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165585289 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12714	CpG island 12714			803 bp distal
Eya2	EYA transcriptional coactivator and phosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr569989	regulatory region 569989			1860 bp distal
Rr569990	regulatory region 569990			1135 bp distal
Rr569991	regulatory region 569991			1636 bp distal
Rr569992	regulatory region 569992			674 bp distal
Rr569993	regulatory region 569993			1478 bp proximal