rs4151934 SNP Detail

Summary

• ID
  rs4151934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55796176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTA CCAACTTTGT CATCAAGCCT
  R
  TTTTAGGAAC TCTTTGGTAG TCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss6350452	mCV23432519_53290886	CRAMUS	CRAMUS_MOUSE	f	SNP			G	A						A									A
ss6394252	C77534_331	TWGNF	TWGNF-Mouse	r	SNP	C					T			T	T						C			T
ss16381978	C16.053.300	TWGNF	TWGNF-Mouse-2	r	SNP		C	C	T	T	T	C	T		T	T	T	C	C	C		C	C	T	C	C	T	C	C	T	C	T	C	C	C	T	C	T	C	C	C		C	T	C	C	C	T	C	T	T
ss39473803	mCV23432519	ABI	CRAMUS_MOUSE	f	SNP			G	A						A									A
ss60465929	NES16445960	PERLEGEN	MM_PANEL2	f	SNP		G		A	A	A	G		A							G			A		G			G					G		A			G			G								A
ss148157708	ENSMUSSNP7019345	ENSEMBL	ENSEMBL_Sanger	f	SNP			G	A															A
ss325189954	CHEV_16_55975926	CHEVERUD	SCREENING_POP	f	SNP																									A																G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs4151934					SNP	G	G	G	A	A	A	G	A	A	A	A	A	G	G	G	G	G	G	A	G	G	A	G	G	A	G	A	G	G	G	A	G	A	G	G	G	G	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394252	C77534_331	TWGNF	TWGNF-Mouse-2	r	SNP	C/T
ss60465929	NES16445960	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55796176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8325	CpG island 8325	983 bp distal
Gm28037	predicted gene, 28037	within coordinates
Rr404882	regulatory region 404882	1952 bp downstream
Rr517157	regulatory region 517157	1920 bp distal
Rr517158	regulatory region 517158	1854 bp distal
Rr517159	regulatory region 517159	706 bp distal
Tssr138800	transcription start site region 138800	1983 bp downstream
Tssr138801	transcription start site region 138801	1949 bp downstream
Tssr138802	transcription start site region 138802	1921 bp downstream
Tssr138803	transcription start site region 138803	606 bp downstream
Tssr141546	transcription start site region 141546	1288 bp upstream
Tssr141547	transcription start site region 141547	1206 bp upstream
Zbtb11	zinc finger and BTB domain containing 11	within coordinates
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1	1196 bp upstream