rs4152077 SNP Detail

Summary

• ID
  rs4152077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3547584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCAGACT GGACAATTAC
  AACATACGAC CCTTCTCTAC CCTGGAGTCT CAGGTTCCAT CTCTTCATAA ATGCTCAAGC
  TGCCCCACTT CTCTTTCTTT CTCACCTGAC CACACATTGT GGTGGCTGTC ATGTGGCTGG
  AGGGTCCCTG AGTGACATCC TCCAACTATG CTGTGTGACT TGGCAGCAAG TGGGTTGCTG
  R
  AGTTCTTCCC CAGCTAGGTT CAGGACTGGA AGGATATGTG GAACCCTCAA AGGAAAATTG
  TACCAAGAAG TACCGTTCAC ACATTCTGGC ACCAGACAGC TCAGGCCACC TTTATTTATT
  TTCACAGCTA AAAGGTTTTA CATTCATTTT CTCACATGCA GTCTCTTTTA AGAACTTCCT
  TGTGGGATGA AATATTTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss6313972	mCV24110274_1367983	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	G		G
ss8574679	WI_WGS_16_3178876	WI	MOUSE	f	SNP			G	A
ss39480886	mCV24110274	ABI	CRAMUS_MOUSE	f	SNP	G	A	G		G
ss147720700	ENSMUSSNP2588807	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs4152077					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3547584 () rs orientation: forward

Symbol	Name	Function Class
Tdgf1-ps1	teratocarcinoma-derived growth factor, pseudogene 1	790 bp upstream
Tssr136822	transcription start site region 136822	296 bp upstream
Tssr136823	transcription start site region 136823	533 bp upstream