rs4152078 SNP Detail

Summary

• ID
  rs4152078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3547636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCCATCT CTTCATAAAT
  GCTCAAGCTG CCCCACTTCT CTTTCTTTCT CACCTGACCA CACATTGTGG TGGCTGTCAT
  GTGGCTGGAG GGTCCCTGAG TGACATCCTC CAACTATGCT GTGTGACTTG GCAGCAAGTG
  GGTTGCTGGA GTTCTTCCCC AGCTAGGTTC AGGACTGGAA GGATATGTGG AACCCTCAAA
  R
  GAAAATTGTA CCAAGAAGTA CCGTTCACAC ATTCTGGCAC CAGACAGCTC AGGCCACCTT
  TATTTATTTT CACAGCTAAA AGGTTTTACA TTCATTTTCT CACATGCAGT CTCTTTTAAG
  AACTTCCTTG TGGGATGAAA TATTTTATGT GCCTGGCCCT TTAAATGAAT CTATGCTCTA
  CAGTGTCAAT TGGCCATTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss6313973	mCV24110281_1368035	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A				G			G
ss8575159	WI_WGS_16_3178928	WI	MOUSE	f	SNP						G		A
ss39475916	mCV24110281	ABI	CRAMUS_MOUSE	f	SNP	G	A				G			G
ss48138347	NES12126053	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G		A		G	G	A	G	A
ss147720703	ENSMUSSNP3764521	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs4152078					SNP	G	A	G	G	G	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48138347	NES12126053	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3547636 () rs orientation: forward

Symbol	Name	Function Class
Tdgf1-ps1	teratocarcinoma-derived growth factor, pseudogene 1	738 bp upstream
Tssr136822	transcription start site region 136822	244 bp upstream
Tssr136823	transcription start site region 136823	481 bp upstream