rs4152079 SNP Detail

Summary

• ID
  rs4152079
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3547704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCTGTC ATGTGGCTGG
  AGGGTCCCTG AGTGACATCC TCCAACTATG CTGTGTGACT TGGCAGCAAG TGGGTTGCTG
  GAGTTCTTCC CCAGCTAGGT TCAGGACTGG AAGGATATGT GGAACCCTCA AAGGAAAATT
  GTACCAAGAA GTACCGTTCA CACATTCTGG CACCAGACAG CTCAGGCCAC CTTTATTTAT
  K
  TTCACAGCTA AAAGGTTTTA CATTCATTTT CTCACATGCA GTCTCTTTTA AGAACTTCCT
  TGTGGGATGA AATATTTTAT GTGCCTGGCC CTTTAAATGA ATCTATGCTC TACAGTGTCA
  ATTGGCCATT GGACTTCTAG GAACAGGAGA GGATATAAAA AGTCATCAGA GGAGAGAGGA
  GTAGGACTGG GGAGTGGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss6313974	mCV24110282_1368103	CRAMUS	CRAMUS_MOUSE	f	SNP	T	G	T		T
ss8575284	WI_WGS_16_3178996	WI	MOUSE	f	SNP			T	G
ss39432201	mCV24110282	ABI	CRAMUS_MOUSE	f	SNP	T	G	T		T
ss147720711	ENSMUSSNP1761449	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs4152079					SNP	T	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3547704 () rs orientation: forward

Symbol	Name	Function Class
Tdgf1-ps1	teratocarcinoma-derived growth factor, pseudogene 1	670 bp upstream
Tssr136822	transcription start site region 136822	176 bp upstream
Tssr136823	transcription start site region 136823	413 bp upstream