rs4152080 SNP Detail

Summary

• ID
  rs4152080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3548072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAGAGA GGAGTAGGAC
  TGGGGAGTGG GGTCCAGGAG ACAGAGGAGT AGGGCCTGAG AAGACAGTTG ATGCAAGAAG
  AAAGAAGACT GTGTAGGGCT GGAGAAGAGA AGAGATTGAG CAGATTGAAA ATAAGAGACG
  GTTGAAAGTG AATTGAACTG GCTGACTGAG AAGACTGTGG GTGGCAGCTG AGCCAGAAGA
  R
  GCTGAGCTGA GCCAGAAAAG ATGATGGTTA GGAGACAGAA AAAAGAGGAG GATCACAAAC
  AGTTTATAGG AAGAAGAGGC CCCATCCCCT GCTGGTCTAC ACGGATTTCT TGGCTGTTAA
  CTTCCCACAG ACTCTCCAGG ACGGGCGCCT CTCTCATTTG GGATATCTTT CTTTTTAATC
  TACTGTTTTC ATTTTGTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6313975	mCV24110283_1368471	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss39419514	mCV24110283	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss147720713	ENSMUSSNP3563186	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4152080					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3548072 () rs orientation: forward

Symbol	Name	Function Class
Tdgf1-ps1	teratocarcinoma-derived growth factor, pseudogene 1	302 bp upstream
Tssr136822	transcription start site region 136822	178 bp downstream
Tssr136823	transcription start site region 136823	45 bp upstream