rs4152081 SNP Detail

Summary

• ID
  rs4152081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3548104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGAGAC AGAGGAGTAG
  GGCCTGAGAA GACAGTTGAT GCAAGAAGAA AGAAGACTGT GTAGGGCTGG AGAAGAGAAG
  AGATTGAGCA GATTGAAAAT AAGAGACGGT TGAAAGTGAA TTGAACTGGC TGACTGAGAA
  GACTGTGGGT GGCAGCTGAG CCAGAAGAAG CTGAGCTGAG CCAGAAAAGA TGATGGTTAG
  R
  AGACAGAAAA AAGAGGAGGA TCACAAACAG TTTATAGGAA GAAGAGGCCC CATCCCCTGC
  TGGTCTACAC GGATTTCTTG GCTGTTAACT TCCCACAGAC TCTCCAGGAC GGGCGCCTCT
  CTCATTTGGG ATATCTTTCT TTTTAATCTA CTGTTTTCAT TTTGTGAAAT TAGCCTTTGG
  GTGTTTCGAG AATGGCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss6313976	mCV24110287_1368503	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	A	G		G
ss8590179	WI_WGS_16_3179396	WI	MOUSE	f	SNP				G	A
ss39459122	mCV24110287	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G		G
ss147720722	ENSMUSSNP6503687	ENSEMBL	ENSEMBL_Sanger	f	SNP			A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs4152081					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3548104 () rs orientation: forward

Symbol	Name	Function Class
Tdgf1-ps1	teratocarcinoma-derived growth factor, pseudogene 1	270 bp upstream
Tssr136822	transcription start site region 136822	210 bp downstream
Tssr136823	transcription start site region 136823	13 bp upstream