rs4152082 SNP Detail

Summary

• ID
  rs4152082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3548119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGGGCCT GAGAAGACAG
  TTGATGCAAG AAGAAAGAAG ACTGTGTAGG GCTGGAGAAG AGAAGAGATT GAGCAGATTG
  AAAATAAGAG ACGGTTGAAA GTGAATTGAA CTGGCTGACT GAGAAGACTG TGGGTGGCAG
  CTGAGCCAGA AGAAGCTGAG CTGAGCCAGA AAAGATGATG GTTAGGAGAC AGAAAAAAGA
  R
  GAGGATCACA AACAGTTTAT AGGAAGAAGA GGCCCCATCC CCTGCTGGTC TACACGGATT
  TCTTGGCTGT TAACTTCCCA CAGACTCTCC AGGACGGGCG CCTCTCTCAT TTGGGATATC
  TTTCTTTTTA ATCTACTGTT TTCATTTTGT GAAATTAGCC TTTGGGTGTT TCGAGAATGG
  CTTTATGAAC TAAAGCCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6313977	mCV24110288_1368518	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss39427087	mCV24110288	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss147720723	ENSMUSSNP6617905	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4152082					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3548119 () rs orientation: forward

Symbol	Name	Function Class
Tdgf1-ps1	teratocarcinoma-derived growth factor, pseudogene 1	255 bp upstream
Tssr136822	transcription start site region 136822	225 bp downstream
Tssr136823	transcription start site region 136823	within coordinates