rs4152083 SNP Detail

Summary

• ID
  rs4152083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3548174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAGAAG AGATTGAGCA
  GATTGAAAAT AAGAGACGGT TGAAAGTGAA TTGAACTGGC TGACTGAGAA GACTGTGGGT
  GGCAGCTGAG CCAGAAGAAG CTGAGCTGAG CCAGAAAAGA TGATGGTTAG GAGACAGAAA
  AAAGAGGAGG ATCACAAACA GTTTATAGGA AGAAGAGGCC CCATCCCCTG CTGGTCTACA
  Y
  GGATTTCTTG GCTGTTAACT TCCCACAGAC TCTCCAGGAC GGGCGCCTCT CTCATTTGGG
  ATATCTTTCT TTTTAATCTA CTGTTTTCAT TTTGTGAAAT TAGCCTTTGG GTGTTTCGAG
  AATGGCTTTA TGAACTAAAG CCATCTGCTA ATATTGTGTT TCTTGTCTTT TCCTCCAACG
  TTTTTACGAG CCGTCGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6313978	mCV24110289_1368573	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss39433586	mCV24110289	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss147720731	ENSMUSSNP1384611	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4152083					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3548174 () rs orientation: forward

Symbol	Name	Function Class
Tdgf1-ps1	teratocarcinoma-derived growth factor, pseudogene 1	200 bp upstream
Tssr136822	transcription start site region 136822	280 bp downstream
Tssr136823	transcription start site region 136823	8 bp downstream