rs4152371 SNP Detail

Summary

• ID
  rs4152371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3777090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA CAATCAGTGA GTTTGCTTTC
  Y
  CAGCTTTCCT GGAAGGACAT GTGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6314269	mCV24674329_1590531	CRAMUS	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss39471978	mCV24674329	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss48139139	NES12122521	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T	C		T	C	C		T	C	C	T		T
ss325088380	CHEV_16_3959226	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4152371					SNP	C	C	T	C	C	T	C	C	T	C	C	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48139139	NES12122521	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3777090 () rs orientation: forward

Symbol	Name	Function Class
Nlrc3	NLR family, CARD domain containing 3	within coordinates
Rr326802	regulatory region 326802	within coordinates
Tssr139740	transcription start site region 139740	230 bp downstream
Tssr139741	transcription start site region 139741	250 bp downstream