rs4152372 SNP Detail

Summary

• ID
  rs4152372
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3777866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA GGGGGAGGGA GGAGGGAGAG
  K
  AGGAGACTAG CACAAATACA ATAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss6314270	mCV24674339_1591307	CRAMUS	CRAMUS_MOUSE	f	SNP	G	T
ss39445217	mCV24674339	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss147722457	ENSMUSSNP4942137	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
ss325088382	CHEV_16_3960002	CHEVERUD	SCREENING_POP	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs4152372					SNP	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3777866 () rs orientation: forward

Symbol	Name	Function Class
Nlrc3	NLR family, CARD domain containing 3	within coordinates
Rr326802	regulatory region 326802	403 bp distal
Tssr139740	transcription start site region 139740	530 bp upstream
Tssr139741	transcription start site region 139741	491 bp upstream