rs4152374 SNP Detail

Summary

• ID
  rs4152374
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3779022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAT TTTGTCATGA GCCGAAGGCC
  K
  AGAACTGCCT GTGAGACATA ACAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss6314272	mCV24674341_1592463	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	T					G		G
ss48139157	NES12122467	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	G	T	G		T	G		T	G	T
ss325088384	CHEV_16_3961158	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs4152374					SNP	G	G	T	G	G	T	G	G	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48139157	NES12122467	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3779022 () rs orientation: forward

Symbol	Name	Function Class
D16Mit32	DNA segment, Chr 16, Massachusetts Institute of Technology 32	1757 bp proximal
Nlrc3	NLR family, CARD domain containing 3	within coordinates
Rr326802	regulatory region 326802	1559 bp distal
Tssr139740	transcription start site region 139740	1686 bp upstream
Tssr139741	transcription start site region 139741	1647 bp upstream