rs4152476 SNP Detail

Summary

• ID
  rs4152476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3897223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGCCTG AGTCCCAGTC
  ATCACACAGA ATAGCTTCTC TTGATACTAA TCCTCGAGGT TTCATTCTTT TAATTCTCCA
  TTCTGGAATC ATCTCTTCAG TCAGAAATGA CATACTCAGC CGGGCGTGGT GGTGCAACAC
  CTTTAATCCC AGCACTCGGG AGGCAGAGGC AGGCAGATTT CTGAGTTCGA GGCCAGCCTG
  R
  TCTACAAAGT GAGTTCCAGG ACAGCCAAGG CTATACAGAG AAACCCTGTC TCGGAAAAAA
  CAAACAAACA AACAAACAAA CAAACAAACC AGAAATGACA TACTCATCTG TAGAACTCTT
  CTGTAGATAT GGCTTGAGAA TATTAAGAAA GGAGAAGTGA CATTTAGTAA AGGAAGGGGA
  ATCTGGGCTT TAGTTAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6314374	mCV25291971_1711676	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss39442868	mCV25291971	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss147723183	ENSMUSSNP3367405	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4152476					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3897223 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7905	CpG island 7905	1261 bp distal
Crebbp	CREB binding protein	1975 bp downstream
Rr370033	regulatory region 370033	1447 bp downstream
Rr510763	regulatory region 510763	1042 bp distal
Rr510764	regulatory region 510764	1287 bp distal
Rr510765	regulatory region 510765	297 bp proximal
Trap1	TNF receptor-associated protein 1	1532 bp upstream
Tssr139752	transcription start site region 139752	1528 bp upstream