rs4156562 SNP Detail

Summary

• ID
  rs4156562
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:6804149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA ATCCAGCAGT CACTTTCAGT
  W
  GCAGACCTAG TGGAGAGTGG ACACT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6318514	mCV25197055_4623374	CRAMUS	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss39447405	mCV25197055	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss147788372	ENSMUSSNP5700564	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss325101900	CHEV_16_6986378	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4156562					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:6804149 () rs orientation: forward

Symbol	Name	Function Class
Rbfox1	RNA binding protein, fox-1 homolog (C. elegans) 1	within coordinates
Rr511178	regulatory region 511178	within coordinates
Tssr136955	transcription start site region 136955	414 bp upstream