rs4159461 SNP Detail

Summary

• ID
  rs4159461
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8439945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTATGACC CCGTATCTGA
  CAAGATGGAA GTTAAGGAGA AAGGCTCTGT TTCAGCTTCA GGTTTAAGAG TGGACACACA
  GGTAGGCTCA GCAGGTGAGA GCACTGACTG CTCTTTCAGA GATCCCGAGT TCAATTCCCT
  CAAACCACAT GGTGGCTCAC CACCATCTGC AATCAAATCT GATGCCTTCT TCTAGTGTGT
  M
  TGAAAACAGA GACACTGTAT TCATATACAT TAAATAGATA AATAAATCTT TAAAAATAAA
  AAAAAAAAAG GTCCCACAGT CTATCGTGGT ATAGAAGGCA TGGTCACAGG AGCACAAGGC
  AGCTGGCCAC ACTGGTTCCT CAGTCAGAAA GCAGAGAGAA GACAGAAATG GGACTACAGT
  GGAGACCCTC AAAGCCTACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss6321461	mCV25052073_6267335	CRAMUS	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss39431256	mCV25052073	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss147829778	ENSMUSSNP770029	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs4159461					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8439945 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	513 bp downstream
Gm7541	predicted gene 7541	1105 bp downstream
Gm9851	predicted gene 9851	863 bp upstream
Gm55031	predicted gene, 55031	1082 bp downstream
Tssr139859	transcription start site region 139859	1846 bp downstream