rs4159462 SNP Detail

Summary

• ID
  rs4159462
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8440104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCATCTG CAATCAAATC
  TGATGCCTTC TTCTAGTGTG TATGAAAACA GAGACACTGT ATTCATATAC ATTAAATAGA
  TAAATAAATC TTTAAAAATA AAAAAAAAAA AGGTCCCACA GTCTATCGTG GTATAGAAGG
  CATGGTCACA GGAGCACAAG GCAGCTGGCC ACACTGGTTC CTCAGTCAGA AAGCAGAGAG
  M
  AGACAGAAAT GGGACTACAG TGGAGACCCT CAAAGCCTAC CCCAAAGATT CGCTTCCTCC
  TAAAAACTTC ACAGCTGGGA AACAAGGGTT CAAACACCAC TAATTCAGGG AAGAAAGGCC
  ACACTCACAG ATCTCCAACA CAGTAAGTTT CTCTGTGAGT TTCCTGGGCC TCCAAGCCTC
  TCTTCTGTTA CAAGGGACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss6321462	mCV25052075_6267494	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss39449850	mCV25052075	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss147829785	ENSMUSSNP419182	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs4159462					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8440104 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	672 bp downstream
Gm7541	predicted gene 7541	946 bp downstream
Gm9851	predicted gene 9851	1022 bp upstream
Gm55031	predicted gene, 55031	923 bp downstream
Tssr139859	transcription start site region 139859	1687 bp downstream