rs4159463 SNP Detail

Summary

• ID
  rs4159463
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8440114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCAAATC TGATGCCTTC
  TTCTAGTGTG TATGAAAACA GAGACACTGT ATTCATATAC ATTAAATAGA TAAATAAATC
  TTTAAAAATA AAAAAAAAAA AGGTCCCACA GTCTATCGTG GTATAGAAGG CATGGTCACA
  GGAGCACAAG GCAGCTGGCC ACACTGGTTC CTCAGTCAGA AAGCAGAGAG AAGACAGAAA
  Y
  GGGACTACAG TGGAGACCCT CAAAGCCTAC CCCAAAGATT CGCTTCCTCC TAAAAACTTC
  ACAGCTGGGA AACAAGGGTT CAAACACCAC TAATTCAGGG AAGAAAGGCC ACACTCACAG
  ATCTCCAACA CAGTAAGTTT CTCTGTGAGT TTCCTGGGCC TCCAAGCCTC TCTTCTGTTA
  CAAGGGACTG CTTCGATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss6321463	mCV25052268_6267504	CRAMUS	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss39437685	mCV25052268	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147829788	ENSMUSSNP4407345	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs4159463					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8440114 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	682 bp downstream
Gm7541	predicted gene 7541	936 bp downstream
Gm9851	predicted gene 9851	1032 bp upstream
Gm55031	predicted gene, 55031	913 bp downstream
Tssr139859	transcription start site region 139859	1677 bp downstream