rs4159464 SNP Detail

Summary

• ID
  rs4159464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8440219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGTCTA TCGTGGTATA
  GAAGGCATGG TCACAGGAGC ACAAGGCAGC TGGCCACACT GGTTCCTCAG TCAGAAAGCA
  GAGAGAAGAC AGAAATGGGA CTACAGTGGA GACCCTCAAA GCCTACCCCA AAGATTCGCT
  TCCTCCTAAA AACTTCACAG CTGGGAAACA AGGGTTCAAA CACCACTAAT TCAGGGAAGA
  R
  AGGCCACACT CACAGATCTC CAACACAGTA AGTTTCTCTG TGAGTTTCCT GGGCCTCCAA
  GCCTCTCTTC TGTTACAAGG GACTGCTTCG ATCCAGCAGA AAAGCTACAG GATCTGTGGG
  ACAGGCAGAT GAGAAGTCAA GCTCCCCACT TCAGGTTCAT TTTCAAGACT TTGTAGGGGC
  TGCTGCAGTG ACTGAGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss6321464	mCV25052269_6267609	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	A
ss39423891	mCV25052269	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147829794	ENSMUSSNP2484068	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs4159464					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8440219 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	787 bp downstream
Gm7541	predicted gene 7541	831 bp downstream
Gm9851	predicted gene 9851	1137 bp upstream
Gm55031	predicted gene, 55031	808 bp downstream
Tssr139859	transcription start site region 139859	1572 bp downstream