rs4159465 SNP Detail

Summary

• ID
  rs4159465
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8440333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAGCCT ACCCCAAAGA
  TTCGCTTCCT CCTAAAAACT TCACAGCTGG GAAACAAGGG TTCAAACACC ACTAATTCAG
  GGAAGAAAGG CCACACTCAC AGATCTCCAA CACAGTAAGT TTCTCTGTGA GTTTCCTGGG
  CCTCCAAGCC TCTCTTCTGT TACAAGGGAC TGCTTCGATC CAGCAGAAAA GCTACAGGAT
  S
  TGTGGGACAG GCAGATGAGA AGTCAAGCTC CCCACTTCAG GTTCATTTTC AAGACTTTGT
  AGGGGCTGCT GCAGTGACTG AGCAGAGGGC AGAGGCAAGC AAGGTAAAGA CAGGAGGGCT
  GATGTCTCTG AGCTCGGTAC TGCTGGGTCA CATGGAGGTG GAGATGGCAT GATAAGGGAA
  ACAGGACAAA GAGGCAGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6321465	mCV25052270_6267723	CRAMUS	CRAMUS_MOUSE	f	SNP		C	G					C		C
ss39419150	mCV25052270	ABI	CRAMUS_MOUSE	f	SNP		C	G					C		C
ss51776934	NES14544634	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	C	C	C		G	C	C	C	C	C	C	C	C
ss147829798	ENSMUSSNP6445162	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4159465					SNP	C	C	G	G	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776934	NES14544634	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8440333 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	901 bp downstream
Gm7541	predicted gene 7541	717 bp downstream
Gm9851	predicted gene 9851	1251 bp upstream
Gm55031	predicted gene, 55031	694 bp downstream
Rr511289	regulatory region 511289	1720 bp distal
Tssr139859	transcription start site region 139859	1458 bp downstream