rs4159466 SNP Detail

Summary

• ID
  rs4159466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8440403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAATTCAG GGAAGAAAGG
  CCACACTCAC AGATCTCCAA CACAGTAAGT TTCTCTGTGA GTTTCCTGGG CCTCCAAGCC
  TCTCTTCTGT TACAAGGGAC TGCTTCGATC CAGCAGAAAA GCTACAGGAT CTGTGGGACA
  GGCAGATGAG AAGTCAAGCT CCCCACTTCA GGTTCATTTT CAAGACTTTG TAGGGGCTGC
  Y
  GCAGTGACTG AGCAGAGGGC AGAGGCAAGC AAGGTAAAGA CAGGAGGGCT GATGTCTCTG
  AGCTCGGTAC TGCTGGGTCA CATGGAGGTG GAGATGGCAT GATAAGGGAA ACAGGACAAA
  GAGGCAGCCC AGCTCGCATC CTGGAGGGCC CTGTGCACCA CACTGAGGGA CGGGCTTTCC
  ATGGCGGTGA GGGAGCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6321466	mCV25052277_6267793	CRAMUS	CRAMUS_MOUSE	f	SNP		T	C					T	T
ss39421381	mCV25052277	ABI	CRAMUS_MOUSE	f	SNP		T	C					T	T
ss51776928	NES14544637	PERLEGEN	MM_PANEL2	f	SNP	T			C	T	T	T		T	T	T	C	T	T	C	T
ss147829804	ENSMUSSNP3133578	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4159466					SNP	T	T	C	C	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776928	NES14544637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8440403 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	971 bp downstream
Gm7541	predicted gene 7541	647 bp downstream
Gm9851	predicted gene 9851	1321 bp upstream
Gm55031	predicted gene, 55031	624 bp downstream
Rr511289	regulatory region 511289	1790 bp distal
Tssr139859	transcription start site region 139859	1388 bp downstream