rs4159467 SNP Detail

Summary

• ID
  rs4159467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8440481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCTTCT GTTACAAGGG
  ACTGCTTCGA TCCAGCAGAA AAGCTACAGG ATCTGTGGGA CAGGCAGATG AGAAGTCAAG
  CTCCCCACTT CAGGTTCATT TTCAAGACTT TGTAGGGGCT GCTGCAGTGA CTGAGCAGAG
  GGCAGAGGCA AGCAAGGTAA AGACAGGAGG GCTGATGTCT CTGAGCTCGG TACTGCTGGG
  Y
  CACATGGAGG TGGAGATGGC ATGATAAGGG AAACAGGACA AAGAGGCAGC CCAGCTCGCA
  TCCTGGAGGG CCCTGTGCAC CACACTGAGG GACGGGCTTT CCATGGCGGT GAGGGAGCTG
  CTGGGGGTGC AGGATGGTAG AATCAACCAG GATGCACTTA GAAAAACCCC TGAGTGAGTT
  AGAATTGGAG AGCTGGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6321467	mCV25052278_6267871	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss39435064	mCV25052278	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4159467					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8440481 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	1049 bp downstream
Gm7541	predicted gene 7541	569 bp downstream
Gm9851	predicted gene 9851	1399 bp upstream
Gm55031	predicted gene, 55031	546 bp downstream
Tssr139859	transcription start site region 139859	1310 bp downstream