rs4159468 SNP Detail

Summary

• ID
  rs4159468
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8440588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGTAGGG GCTGCTGCAG
  TGACTGAGCA GAGGGCAGAG GCAAGCAAGG TAAAGACAGG AGGGCTGATG TCTCTGAGCT
  CGGTACTGCT GGGTCACATG GAGGTGGAGA TGGCATGATA AGGGAAACAG GACAAAGAGG
  CAGCCCAGCT CGCATCCTGG AGGGCCCTGT GCACCACACT GAGGGACGGG CTTTCCATGG
  S
  GGTGAGGGAG CTGCTGGGGG TGCAGGATGG TAGAATCAAC CAGGATGCAC TTAGAAAAAC
  CCCTGAGTGA GTTAGAATTG GAGAGCTGGC TCAGCAGTTA AGAGTGCTTG CTGCTCTTGC
  AGAAAACCCA AGTTCAGTTT CTAGCACCCA TGTTGGGCAG CTCATAATGC CCTTTAACTC
  CAGCTACAAG GGATCTGATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6321468	mCV25052279_6267978	CRAMUS	CRAMUS_MOUSE	f	SNP	C	G	C	C
ss39442914	mCV25052279	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	C
ss147829808	ENSMUSSNP4978240	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4159468					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8440588 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	1156 bp downstream
Gm7541	predicted gene 7541	462 bp downstream
Gm9851	predicted gene 9851	1506 bp upstream
Gm55031	predicted gene, 55031	439 bp downstream
Tssr139859	transcription start site region 139859	1203 bp downstream