rs4159533 SNP Detail

Summary

• ID
  rs4159533
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8499367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCCCAGC ACTCAGGAGG
  CAGAAACAGG CAGATCTCTG GTCTACATAA CGGAGTCCCA AGACTACATA GAAAAACTCT
  ATCTCCAATA AAAATAAAAC AAAATGAAAT GAAACAGGAC CCAGGGTTAT TCAGCTGCGC
  CCTGGCCCTG TTGGAGTTGG GCTGACTCTA GTACTGGCCA CATGTGCTTC ATTTCTGACG
  W
  TTGGTTTCTT CTTTGTAAGA AAAGCCTAAA AACTGATACC CCCTGAGTCC CCAAAGTGGA
  GACAGGAGGG CTACATGGTC AGGGGCTGCC TATTCTGCTT GGTCCTGCTC TGGAAGGAGA
  CTCTACAGGA AGCTGTGAGG GGAAGTCATG GAAATTGGCT CTGAGGGGAA GCTCTGAACA
  GAGAGAATCA CTCTTAACTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6321533	mCV23101684_6327218	CRAMUS	CRAMUS_MOUSE	f	SNP	T	T	A					T		T
ss39445649	mCV23101684	ABI	CRAMUS_MOUSE	f	SNP	T	T	A					T		T
ss51776445	NES14543197	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	T	T	T		T	T	T	T	T	T	T	T	T
ss147830188	ENSMUSSNP398610	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4159533					SNP	T	T	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776445	NES14543197	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8499367 () rs orientation: forward

Symbol	Name	Function Class
Gm59855	predicted gene, 59855	within coordinates
Litafd	LITAF domain containing	within coordinates
Rr322148	regulatory region 322148	567 bp distal
Rr322149	regulatory region 322149	34 bp proximal
Rr322150	regulatory region 322150	1034 bp proximal
Tssr137001	transcription start site region 137001	713 bp downstream
Tssr137002	transcription start site region 137002	709 bp downstream
Tssr137003	transcription start site region 137003	686 bp downstream
Tssr137004	transcription start site region 137004	1368 bp upstream
Tssr139871	transcription start site region 139871	1240 bp downstream