rs4159534 SNP Detail

Summary

• ID
  rs4159534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8501057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCGCCTCC CCTCCCTGTG
  TCTCATGTTC AGGCACCCAG AAGGCCAGTC ACCAAGCAGA CAGCACCTTC TCTGGTGAGC
  CTGGGCCTCA CACTGCTCAC CTGAGATGGT GCCATACCTA GAGTTTCTGA GATATCTTCC
  TTTCTCTACT GCAAACTTAT TGGAGGATTT TAGTATTTGT TTCTTGAGAC AGGGTTTCTC
  Y
  GTGTAAACCT GGCTCCCCTG GAACTTACTC TGATCTGACC CATCTTCCCT GTTTCCATTC
  CCCAGGCCCG TTCACTGGCA TACCTTATAT GCCAACTTCG ATCCCAGTGC AGGCCGTATG
  TCCCTACTGT GGGAACCGTA TCATGACAGT GACCACCTAT ACCCCAGGCC TCCTCACCTG
  GCTGCTGTGC AGTGGCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss6321534	mCV23101673_6328911	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss39483733	mCV23101673	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss147830192	ENSMUSSNP4528629	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs4159534					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8501057 () rs orientation: forward

Symbol	Name	Function Class
Gm59855	predicted gene, 59855	442 bp upstream
Litafd	LITAF domain containing	within coordinates
Rr322149	regulatory region 322149	1057 bp distal
Rr322150	regulatory region 322150	within coordinates
Tssr137004	transcription start site region 137004	314 bp downstream
Tssr139871	transcription start site region 139871	442 bp upstream