rs4159535 SNP Detail

Summary

• ID
  rs4159535
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8501064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTCCCT GTGTCTCATG
  TTCAGGCACC CAGAAGGCCA GTCACCAAGC AGACAGCACC TTCTCTGGTG AGCCTGGGCC
  TCACACTGCT CACCTGAGAT GGTGCCATAC CTAGAGTTTC TGAGATATCT TCCTTTCTCT
  ACTGCAAACT TATTGGAGGA TTTTAGTATT TGTTTCTTGA GACAGGGTTT CTCCGTGTAA
  M
  CCTGGCTCCC CTGGAACTTA CTCTGATCTG ACCCATCTTC CCTGTTTCCA TTCCCCAGGC
  CCGTTCACTG GCATACCTTA TATGCCAACT TCGATCCCAG TGCAGGCCGT ATGTCCCTAC
  TGTGGGAACC GTATCATGAC AGTGACCACC TATACCCCAG GCCTCCTCAC CTGGCTGCTG
  TGCAGTGGCC TCTTTGTGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss6321535	mCV23101672_6328918	CRAMUS	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss39456925	mCV23101672	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss147830199	ENSMUSSNP4755992	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs4159535					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8501064 () rs orientation: forward

Symbol	Name	Function Class
Gm59855	predicted gene, 59855	449 bp upstream
Litafd	LITAF domain containing	within coordinates
Rr322149	regulatory region 322149	1064 bp distal
Rr322150	regulatory region 322150	within coordinates
Tssr137004	transcription start site region 137004	321 bp downstream
Tssr139871	transcription start site region 139871	449 bp upstream