rs4159536 SNP Detail

Summary

• ID
  rs4159536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8501126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGTGAG CCTGGGCCTC
  ACACTGCTCA CCTGAGATGG TGCCATACCT AGAGTTTCTG AGATATCTTC CTTTCTCTAC
  TGCAAACTTA TTGGAGGATT TTAGTATTTG TTTCTTGAGA CAGGGTTTCT CCGTGTAAAC
  CTGGCTCCCC TGGAACTTAC TCTGATCTGA CCCATCTTCC CTGTTTCCAT TCCCCAGGCC
  Y
  GTTCACTGGC ATACCTTATA TGCCAACTTC GATCCCAGTG CAGGCCGTAT GTCCCTACTG
  TGGGAACCGT ATCATGACAG TGACCACCTA TACCCCAGGC CTCCTCACCT GGCTGCTGTG
  CAGTGGCCTC TTTGTGTTTG GGTAAGTAGT GGGAACCTGC TAGAGATAGG GTGGGTTAGC
  CGAGTGCAGA GAGAACTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6321536	mCV23101671_6328980	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss39453026	mCV23101671	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss147830201	ENSMUSSNP4313783	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4159536					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8501126 () rs orientation: forward

Symbol	Name	Function Class
Gm59855	predicted gene, 59855	511 bp upstream
Litafd	LITAF domain containing	within coordinates
Rr322149	regulatory region 322149	1126 bp distal
Rr322150	regulatory region 322150	within coordinates
Tssr137004	transcription start site region 137004	383 bp downstream
Tssr139871	transcription start site region 139871	511 bp upstream