rs4159610 SNP Detail

Summary

• ID
  rs4159610
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8555277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACTTCCT AGGAACCTTC
  ATTCATTTAT GAAAGCCACT ATCACTTGCT GAACGGTCCA TTCATTGCCC CTCACTGGGA
  TTCCTGCCTG TCTGACCCCT TTAGGGCAGG TAACCGCGCA TACTGCCTTC ACTTAAAGTA
  CCAAGTCAAA AGAAAAGAAA ATGACCAACC CAGCATGAGA TCCCGAAGCC AGAGTCCCTC
  S
  ACTGCGCTTT CACAGCAAAC CTTGATAGCG AAGCTCTACA AACAGTATAA AATCCAGTAC
  CAAGATAAAT TCCTGCGGCT CCGGTAGAAA ACATAGTTAC CTCCAGAACT TAATCTGCTT
  CTGCAGTAGG CCAGCCATGT GCGGCGGAAC TCCATAGTTT CAAGCACACT TTTTAGCCGG
  ACGTGGACGG CACCACCTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6321610	mCV23244826_6383492	CRAMUS	CRAMUS_MOUSE	f	SNP	C	G	C	C
ss39442808	mCV23244826	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4159610					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8555277 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7942	CpG island 7942	103 bp proximal
Gm59849	predicted gene, 59849	75 bp upstream
Rr511319	regulatory region 511319	848 bp distal
Rr511320	regulatory region 511320	within coordinates
Rr511321	regulatory region 511321	86 bp proximal
Rr511322	regulatory region 511322	187 bp proximal
Rr511323	regulatory region 511323	919 bp proximal
Tssr139876	transcription start site region 139876	320 bp downstream
Tssr139877	transcription start site region 139877	1471 bp downstream
Tssr139878	transcription start site region 139878	1486 bp downstream
Tssr139879	transcription start site region 139879	1548 bp downstream
Usp7	ubiquitin specific peptidase 7	within coordinates