rs4159611 SNP Detail

Summary

• ID
  rs4159611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8558009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTAGTCC AGGAAAAAAA
  AAATGCAACA ATTTGCTATC TTGCCTTAGG ACACCAGTCA ACCCAACTTC CCTTGCTGAA
  GTTCAAAACC TAAACAGAGG CCAGCAAAAT GGCAGAGTGG GCAAAGGTGC TGTCACCAAG
  TCCTATGACC TGAATTCCAG CAAGTTGGCC TCTGGTTTCC ACTGTGCATG CTGCAAAAGC
  R
  CACACACTCA AATAAATATA TGTACATGTA ATTTTTTTTT TTTTACTTAA AGGGGGAAAA
  AACCCAAAGT GGATAAAGGA GAGATGGTTC TGTATCTTTT ATCTAATGTG CCTGGAACCA
  GAAGTGTTTC ACATCTCAGT CTGGGGAATT TTTGACTGTA CATAAAAGGA GGTATCTTTG
  ATAACAGAAC CCAAATCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6321611	mCV24750264_6386175	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss39419962	mCV24750264	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss147830571	ENSMUSSNP4759695	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4159611					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8558009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7942	CpG island 7942	713 bp distal
Gm59849	predicted gene, 59849	within coordinates
Rr511321	regulatory region 511321	1814 bp distal
Rr511323	regulatory region 511323	1313 bp distal
Rr511324	regulatory region 511324	1065 bp proximal
Rr511325	regulatory region 511325	1142 bp proximal
Tssr139877	transcription start site region 139877	1250 bp upstream
Tssr139878	transcription start site region 139878	1193 bp upstream
Tssr139879	transcription start site region 139879	1170 bp upstream
Usp7	ubiquitin specific peptidase 7	within coordinates