rs4159612 SNP Detail

Summary

• ID
  rs4159612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8558725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAGATTT CAGAACATTT
  TAGATTTAGG AGTCTCTGAC TAGAGCTATT TAACTTGAAT ATACACATAG TGAAATACTA
  CATAGCAGTG AAAAAGAGTA AGATCCCGCC AGGCGTGGTG GCGCAAGCCT TTAATCCCAG
  CACTCAGGAG GCAGAAGCAG GCAGAGTCTG CTGGTCTGGT CTACAGAGTG AGTTCCAGGA
  Y
  AGCCAGGGCT ACACAGAGAA ACCCTGTCTC GAAAAAAAAA CAAACAAAGA GTAAGATCCC
  ACTATGTGTT ACTTATAAAA GGGATGAATC ATACTTTAAG AAAACAGCCC AAAGGCTACA
  AATACTTCCA CCTCCATCAA GGTCCTTAGC AGGCAAAGCA ATTTCAAGAA AAAGAGAAAA
  ATAGATTGAA CCTTGGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss6321612	mCV24750263_6386891	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	C
ss39473671	mCV24750263	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs4159612					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8558725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7942	CpG island 7942	1429 bp distal
Gm59849	predicted gene, 59849	within coordinates
Rr511324	regulatory region 511324	349 bp proximal
Rr511325	regulatory region 511325	426 bp proximal
Tssr139877	transcription start site region 139877	1966 bp upstream
Tssr139878	transcription start site region 139878	1909 bp upstream
Tssr139879	transcription start site region 139879	1886 bp upstream
Usp7	ubiquitin specific peptidase 7	within coordinates