rs4159742 SNP Detail

Summary

• ID
  rs4159742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8647444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGACAG GTGCCGGGCC
  GCTACTAGCG CTGGGCGCAC TGTCCGCCAG GCGGCCCTGG TGTCCAGCTC CCTCCGGTCC
  CCTTCTCCGG GAAATCTCGG TGAGCGTCCC CAGGTCGCTC ACACCTCCGG AGAATTTTCC
  TTTGGATTCA CACGCTTTAC TTGCCCCACT AAGGTTGGGA ATTCTGGCAT TAAAAAAACA
  Y
  AGAAAGGGCG CTGCAAACAG AGGTAGACTG CACTTCTCAG GAACTCGAGG AGTCAGCACA
  TAAACACTGC GTGACCATGC ACTTGCAAGC CCGGGAAAGG CCCCCGCGGG GTGCGGTCAC
  CCGGCGGAGT CACGTGACTC TCAGACGGGG TGCGGGAGCG AAGCGAGCAC CGCGCAAGCG
  CAATCCCTTG GCTCCAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6321742	mCV25076408_6478375	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss39425894	mCV25076408	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss147831443	ENSMUSSNP6746569	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4159742					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8647444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7943	CpG island 7943	within coordinates
Hapstr1	HUWE1 associated protein modifying stress responses	520 bp upstream
Rr322186	regulatory region 322186	1644 bp distal
Rr325518	regulatory region 325518	within coordinates
Rr370042	regulatory region 370042	124 bp upstream
Tssr137006	transcription start site region 137006	416 bp upstream
Tssr137007	transcription start site region 137007	457 bp upstream
Tssr137008	transcription start site region 137008	513 bp upstream
Tssr137009	transcription start site region 137009	535 bp upstream
Tssr137010	transcription start site region 137010	1516 bp upstream