rs4159743 SNP Detail

Summary

• ID
  rs4159743
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8648721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCACGGCC GTGGCTCAGC
  TCTACAAAGG TGAGGCCGCG CCGCCATCTT GGCGCCGCCC CGGCCTGCGG AGCTGCTCTT
  CCCCCCGGTT CCCGGCTCGG TCCCCGGGAC CTGGCGGCTC CTCGCACCCT GCGGGGATAG
  CCGGACGACT GGGAGGGGAG GGCCGTGCCG CGGACCCCTG GCCATCTGAC CCGCAGGACG
  S
  CGACGGAGGA GCTACCCTGG GAGGGGGAAA ACTACGATGA AGGATGGGGA GACCCCCGAT
  TTAGAGTACC TCCCGAGGGT CCCCACGTAC CGGTCCGGGT GTCCCCGGTC GGATCGTGGG
  GGTAGGGGAG GAGTCCCTGT CACAAAATGG CGAAGGAGGC GGTGGGGCGG CCCTATTGTG
  CCCCGAGCCG GCCTCGGGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss6321743	mCV25076505_6479655	CRAMUS	CRAMUS_MOUSE	f	SNP	C	G	G
ss39469569	mCV25076505	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs4159743					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8648721 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7943	CpG island 7943	within coordinates
Hapstr1	HUWE1 associated protein modifying stress responses	within coordinates
Rr325518	regulatory region 325518	within coordinates
Rr370042	regulatory region 370042	818 bp downstream
Tssr137006	transcription start site region 137006	836 bp downstream
Tssr137007	transcription start site region 137007	799 bp downstream
Tssr137008	transcription start site region 137008	753 bp downstream
Tssr137009	transcription start site region 137009	715 bp downstream
Tssr137010	transcription start site region 137010	239 bp upstream