rs4160552 SNP Detail

Summary

• ID
  rs4160552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9736864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTTCTC TCTTGACCTT
  GGAGCATTAA CAACCTACCT ATTTTTAAAG AACTCCAGCA GGAAAGGTAC TTAAGTCTTA
  TGCTTCATGT TTTTATCCCA ATAGGAATTT CTTTGAATGT TGCAGATCAA CTTCTGAATT
  TTATAAGACA AGACCATCCT CCATGATAAA TGCAAATAAT CAGAGCTCAG AATTCAAGGC
  Y
  CTGTCTCTTG AGTACCCAGA CTCAGCACTG AGGGAAACAA CCCAGAAATG GAAACAGGAC
  GTGTTCCTCT CTGTCCCATG CTTTCCTTTG CTCACCAATA GGCATCTGTG CTTTTCACAA
  AAGAGACACG GAAACTGTTC TCTCCAGGGA GGACAGGCAC AGAATGACCT GTAAGACTCT
  ACTACCTGGT CTAGATGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss6322559	mCV24569834_7552849	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	C
ss39432961	mCV24569834	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147842240	ENSMUSSNP3431667	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs4160552					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9736864 () rs orientation: forward

Symbol	Name	Function Class
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	within coordinates
Tssr139889	transcription start site region 139889	755 bp downstream
Tssr139890	transcription start site region 139890	798 bp downstream