rs4160553 SNP Detail

Summary

• ID
  rs4160553
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9738411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCAAGCA CTATTCACGT
  ACTTGAAAAG AGTTTACTCA ACAAGGAGGC AGAGTGGGAA GAGGCTGAAG AGTGCAGAAG
  GGCTGTGCTA GAAAGCAGAT GCTGTATGGA GAGTATAAGA CCAGCAGGCA CAGGGGTCAG
  CAGGGATCAG CAGGGCAATG CTTCCAAGGC ATAGAAACAA ACCACTGATG CCTGAGGCCT
  W
  GCTCTGCTTC TTCTGGCCCC ATTCTGTATC TCACAGGTGT GCAACCTCCC TCCCTCCCCC
  CAGTAATGTC CTGAACTCCA AATCCACCAC ATCTCCTACT TCTTGGACCA ACTTGGGGAG
  AAGAAACACC AAAGTCTGCA CTAGAAAGAA GCCAATAAAC CAGGCATGGT GGATGCACAC
  CTACAATCAC AGTACCCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss6322560	mCV24569835_7554361	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss39455878	mCV24569835	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss147842261	ENSMUSSNP5809854	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs4160553					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9738411 () rs orientation: forward

Symbol	Name	Function Class
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	within coordinates
Tssr139889	transcription start site region 139889	779 bp upstream
Tssr139890	transcription start site region 139890	737 bp upstream
Tssr139891	transcription start site region 139891	609 bp downstream