rs4160925 SNP Detail

Summary

• ID
  rs4160925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10362824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT CCGACTTCAA TTCTCAGATC
  Y
  CAAATAGTGG AAGGCGAGAA CTTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss6322935	mCV24972613_8177640	CRAMUS	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss39420048	mCV24972613	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147845422	ENSMUSSNP1394750	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs4160925					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10362824 () rs orientation: forward

Symbol	Name	Function Class
Clec16a	C-type lectin domain family 16, member A	379 bp upstream
Cpgi7953	CpG island 7953	1664 bp distal
Cpgi7954	CpG island 7954	within coordinates
Dexi	dexamethasone-induced transcript	1906 bp upstream
Rr404676	regulatory region 404676	1658 bp downstream
Rr404677	regulatory region 404677	171 bp upstream
Rr511518	regulatory region 511518	1416 bp distal
Rr511519	regulatory region 511519	within coordinates
Tssr137042	transcription start site region 137042	380 bp upstream
Tssr137043	transcription start site region 137043	398 bp upstream
Tssr137044	transcription start site region 137044	430 bp upstream
Tssr137045	transcription start site region 137045	468 bp upstream
Tssr139926	transcription start site region 139926	1864 bp upstream