rs4160929 SNP Detail

Summary

• ID
  rs4160929
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10364226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGA CTTAATGACT GTAGCTTTGG
  K
  CATATTTTCT CTCTCTGTCC TTCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6322939	mCV24972642_8179042	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss39418025	mCV24972642	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss147845447	ENSMUSSNP4141665	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4160929					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10364226 () rs orientation: forward

Symbol	Name	Function Class
Clec16a	C-type lectin domain family 16, member A	within coordinates
Cpgi7954	CpG island 7954	232 bp distal
Rr404677	regulatory region 404677	931 bp downstream
Rr511519	regulatory region 511519	943 bp distal
Tssr137042	transcription start site region 137042	1011 bp downstream
Tssr137043	transcription start site region 137043	974 bp downstream
Tssr137044	transcription start site region 137044	935 bp downstream
Tssr137045	transcription start site region 137045	908 bp downstream