rs4161216 SNP Detail

Summary

• ID
  rs4161216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10610158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGTCTG GTGTTTGGGG
  CTCTCAGAGG GCTCATATAT AAAGGTAAAC CCCACTGTGA CCTGTCGGCC CACCCCTGAT
  TGATTGTTCC CACCCTGCCC AGTCCCCTCT GTGAGGGCGG CACAGGGTTT GCAGGACTGG
  CTTAGGGGCC AAGTTACTCA TCTTGCTTTG AAGCATGCTG ACTTATTGAA TGTGAGATGG
  Y
  CTCACACAAT GAAGAATGAC CTTGAACTTC TAACCCTGGT CCCTTTACCT CCCAGGGGTT
  GGAATCACAT ATGTGTGCTT CCATGCCCTG GACATGCAGT GTTGGAGATG CAGCCCATGC
  ATGGCCTTGG TTGGGCATTC GAGGAAGCAC TCTACCAACT CCTAGCAAAA GCTTCCCACC
  CACTCCATGT GCATTAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss6323230	mCV25080511_8419724	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C
ss39478199	mCV25080511	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs4161216					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147847360	ENSMUSSNP5699403	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10610158 () rs orientation: forward

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	189 bp upstream
Prm3	protamine 3	1380 bp upstream
Rr511598	regulatory region 511598	1526 bp distal
Rr511599	regulatory region 511599	1387 bp distal
Tssr137053	transcription start site region 137053	846 bp downstream
Tssr137054	transcription start site region 137054	703 bp downstream
Tssr137055	transcription start site region 137055	476 bp downstream
Tssr137056	transcription start site region 137056	462 bp downstream
Tssr139950	transcription start site region 139950	1375 bp upstream
Tssr139951	transcription start site region 139951	1344 bp upstream
Tssr139952	transcription start site region 139952	811 bp upstream
Tssr139953	transcription start site region 139953	707 bp upstream
Tssr139954	transcription start site region 139954	654 bp upstream
Tssr139955	transcription start site region 139955	555 bp upstream
Tssr139956	transcription start site region 139956	187 bp upstream
Tssr139957	transcription start site region 139957	839 bp downstream