rs4161217 SNP Detail

Summary

• ID
  rs4161217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10610421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT AAGCGCTTCT TAACTTCTTA
  R
  CTTCCTATCT TGGATCTTAG GCTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss6323231	mCV25080521_8419987	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G					A
ss39416667	mCV25080521	ABI	CRAMUS_MOUSE	f	SNP	G	G					A
ss63647378	NES17047442	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G		A	A	A	A	A
ss147847365	ENSMUSSNP4907185	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs4161217					SNP	G	G	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63647378	NES17047442	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10610421 () rs orientation: forward

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	452 bp upstream
Prm3	protamine 3	1643 bp upstream
Tssr137053	transcription start site region 137053	1109 bp downstream
Tssr137054	transcription start site region 137054	966 bp downstream
Tssr137055	transcription start site region 137055	739 bp downstream
Tssr137056	transcription start site region 137056	725 bp downstream
Tssr139950	transcription start site region 139950	1638 bp upstream
Tssr139951	transcription start site region 139951	1607 bp upstream
Tssr139952	transcription start site region 139952	1074 bp upstream
Tssr139953	transcription start site region 139953	970 bp upstream
Tssr139954	transcription start site region 139954	917 bp upstream
Tssr139955	transcription start site region 139955	818 bp upstream
Tssr139956	transcription start site region 139956	450 bp upstream
Tssr139957	transcription start site region 139957	576 bp downstream