rs4161640 SNP Detail

Summary

• ID
  rs4161640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10956838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAG ATAAAAAGAC CATGGAAGGG
  Y
  CATGGGCTCA GCCCTCTCCA CAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6323654	mCV22788890_8769233	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss39485217	mCV22788890	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss147850694	ENSMUSSNP1188292	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4161640					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10956838 () rs orientation: forward

Symbol	Name	Function Class
D16Mit164	DNA segment, Chr 16, Massachusetts Institute of Technology 164	718 bp proximal
Gm61125	predicted gene, 61125	within coordinates
Zc3h7a	zinc finger CCCH type containing 7 A	within coordinates