rs4161643 SNP Detail

Summary

• ID
  rs4161643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10959039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG AGTTCAATTC CCAGCAACTA
  Y
  ATGGTGGCTC ACAACCATCT GTAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss6323657	mCV22788884_8771434	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss39482469	mCV22788884	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147850714	ENSMUSSNP6579245	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs4161643					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10959039 () rs orientation: forward

Symbol	Name	Function Class
D16Mit164	DNA segment, Chr 16, Massachusetts Institute of Technology 164	1333 bp distal
Gm61125	predicted gene, 61125	within coordinates
Rr322718	regulatory region 322718	1469 bp proximal
Zc3h7a	zinc finger CCCH type containing 7 A	within coordinates