rs4161645 SNP Detail

Summary

• ID
  rs4161645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10959703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACTTTTTT CTATTAGCAA TATGGTTGCA TAGCTGTGTG
  GAGAAAAAAA TATATATATA AAATACACAC ACACACACAG CACGCACACA TGCATCATGC
  R
  CACACACATA TACACTAAAG ACAGGGCATT GCTTAGTATA ACTAATTTTA CATTAGAGCA
  AAATAAGTCT TATAATGAGT GCTAATGCTT AGCAGTAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss6323659	mCV22788877_8772098	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	A
ss39457008	mCV22788877	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss147850724	ENSMUSSNP2066047	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs4161645					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10959703 () rs orientation: forward

Symbol	Name	Function Class
D16Mit164	DNA segment, Chr 16, Massachusetts Institute of Technology 164	1997 bp distal
Gm61125	predicted gene, 61125	within coordinates
Rr316539	regulatory region 316539	1898 bp proximal
Rr322718	regulatory region 322718	805 bp proximal
Rr322719	regulatory region 322719	1595 bp proximal
Zc3h7a	zinc finger CCCH type containing 7 A	within coordinates