rs4161700 SNP Detail

Summary

• ID
  rs4161700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11021190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGG AGGCCCGGAA CCGGAAAGCA
  R
  TCAGTAACAC TGCGAGGGGG AGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss6323714	mCV25081946_8834994	CRAMUS	CRAMUS_MOUSE	f	SNP	G		A
ss39481111	mCV25081946	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss147850973	ENSMUSSNP192106	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs4161700					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11021190 () rs orientation: forward

Symbol	Name	Function Class
2610020C07Rik	RIKEN cDNA 2610020C07 gene	57 bp upstream
Cpgi7962	CpG island 7962	within coordinates
Gm60496	predicted gene, 60496	17 bp downstream
Rr404684	regulatory region 404684	within coordinates
Rr511715	regulatory region 511715	1126 bp distal
Rr511716	regulatory region 511716	470 bp distal
Rr511717	regulatory region 511717	within coordinates
Rr511718	regulatory region 511718	75 bp proximal
Rsl1d1	ribosomal L1 domain containing 1	34 bp upstream
Tssr137080	transcription start site region 137080	49 bp upstream
Tssr140008	transcription start site region 140008	14 bp upstream