rs4161860 SNP Detail

Summary

• ID
  rs4161860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:11366916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATG ACATATCTTG TTATGTAGCA
  Y
  AGACTAGTCA TGAACTCAAC ATTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss6323879	mCV24141763_9179495	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T
ss39449805	mCV24141763	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147852297	ENSMUSSNP5523310	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				C
ss325109345	CHEV_16_11549145	CHEVERUD	SCREENING_POP	f	SNP				C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs4161860					SNP	C	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11366916 () rs orientation: forward

Symbol	Name	Function Class
5830487K18Rik	RIKEN cDNA 5830487K18 gene	690 bp upstream
Snx29	sorting nexin 29	Intron